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MyASPN >> Mail Archive >> scipy-dev
scipy-dev
Re: [SciPy-dev] sparse matrix support status
by Robert Cimrman other posts by this author
Oct 7 2005 7:47AM messages near this date
Re: [SciPy-dev] sparse matrix support status | Re: [SciPy-dev] sparse matrix support status
Travis Oliphant wrote:
>  Robert Cimrman wrote:
>  
> > Hi all,
> >
> > I would like to know what is the status of the sparse matrix support 
> > in SciPy. Searching the scipy- mailing lists did not reveal anything 
> > recent. Is there some code to work on? I would like to help - though I 
> > am a newbie to the Scipy world, I do have experience with sparse 
> > matrices.
> >
> > If there is nothing yet, a quick possibility would be to wrap a 
> > library like sparskit2 and give it a pythonic feel. What are your 
> > opinions?
> >
>  
>  There is a sparse matrix in SciPy now:  under Lib/sparse.  I've 
>  implemented about 3 or 4 sparse matrices over the years, using various 
>  libraries as back-ends.  Right now, the sparse matrix code builds on top 
>  of  superlu and some home-grown caclulation tools.
>  I'd love some help with this.  So, take a look at what's there and see 
>  how you can help.
>  
>  -Travis

I have tried to send some suggestions directly to Travis to know his 
opinion before posting it to the list, but some internet-born monster 
ate them all, so let me summarize it here:

I am just redesigning a finite element code (some example results 
obtained by colleagus are at 
http://www-rocq.inria.fr/MACS/Coeur/index.html) written in matlab+c for 
python+c, so the proposals below scratch mainly my itches, but they 
might be of a more general interest.

1. add the umfpack sparse solver

2. I have at hand several convenient and fast routines for CSR format in
the context of assembling finite element matrices, namely
- preallocate the exact storage of the global CSR matrix corresponding
to a given finite element mesh (i.e. create a neighbour graph for the
nodes in the mesh).
- insert/add a full or sparse block (the element "stiffness" matrix) 
into a preallocated CSR matrix (the global matrix)
- ...

I will pythonize the code in all cases, but do you think it would be 
useful to have it in scipy?

Well, and I am willing to do some other work too, but let me first 
reduce my level of scipy-newbieness...

Robert Cimrman

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Thread:
Travis Oliphant
Robert Cimrman
Travis Oliphant
Robert Cimrman
Fernando Perez
Jonathan Guyer
Fernando Perez
Jonathan Guyer
Jonathan Guyer
Robert Cimrman
Jonathan Guyer
Ed Schofield
Jonathan Guyer
Ed Schofield
Travis Oliphant
Jonathan Guyer
Nils Wagner
Jonathan Guyer
Robert Cimrman
Robert Kern
Robert Cimrman
Travis Oliphant
Fernando Perez
Jonathan Guyer
Travis Oliphant
Nils Wagner
Jeff Whitaker
Nils Wagner

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