Re: [SciPy-dev] sparse matrix support status
by Nils Wagner other posts by this author
Nov 22 2005 12:17PM messages near this date
Re: [SciPy-dev] sparse matrix support status
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Re: [SciPy-dev] sparse matrix support status
On Tue, 22 Nov 2005 15:05:10 -0500
Jonathan Guyer <guyer@[...].gov> wrote:
>
> On Oct 7, 2005, at 4:00 PM, I wrote:
>
> > regardless, pysparse is BSD
> > licensed, so it's perfectly legal to use his code to
> >improve
> > scipy.sparse (assuming that rigorous benchmarking
> >determines that there
> > are, in fact, improvements to be made). We'll do some
> >tests and, if a
> > merge is warranted, we'll run it by Roman out of
> >courtesy.
>
> I've finally done some benchmarking of scipy.sparse and
> PySparse and
> posted my results and comments on plone[*]:
>
> <http://www.scipy.org/wikis/featurerequests/SparseSolvers>
>
> Bottom line is that, with a couple of exceptions,
> PySparse is both
> faster and less memory intensive than SciPy. I don't
> know whether
> anything can be lifted from PySparse to improve SciPy's
> implementation.
>
> [*] Not that this comes as a surprise to anybody here,
> but the SciPy
> plone wiki is scary slow. I also couldn't get it to
> accept reST, even
> though I've seen other people using it there.
> --
> Jonathan E. Guyer, PhD
> Metallurgy Division
> National Institute of Standards and Technology
> <http://www.metallurgy.nist.gov/>
>
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> Scipy-dev@[...].net
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Jonathan,
I had a short look on your comments.
Actually, you can import matrices given in matrixmarket
format.
Help on function mmread in module scipy.io.mmio:
mmread(source)
Reads the contents of a Matrix Market file 'filename'
into a matrix.
Inputs:
source - Matrix Market filename (extensions
.mtx, .mtz.gz)
or open file object.
Outputs:
a - sparse or full matrix
Are you aware of a sparse eigensolver for scipy ?
Nils
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