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MyASPN >> Mail Archive >> scipy-dev
scipy-dev
Re: [SciPy-dev] sparse matrix support status
by Nils Wagner other posts by this author
Nov 22 2005 12:17PM messages near this date
Re: [SciPy-dev] sparse matrix support status | Re: [SciPy-dev] sparse matrix support status
On Tue, 22 Nov 2005 15:05:10 -0500
  Jonathan Guyer <guyer@[...].gov>  wrote:
>  
>  On Oct 7, 2005, at 4:00 PM, I wrote:
>  
> >  regardless, pysparse is BSD
> > licensed, so it's perfectly legal to use his code to 
> >improve
> > scipy.sparse (assuming that rigorous benchmarking 
> >determines that there
> > are, in fact, improvements to be made). We'll do some 
> >tests and, if a
> > merge is warranted, we'll run it by Roman out of 
> >courtesy.
>  
>  I've finally done some benchmarking of scipy.sparse and 
> PySparse and 
>  posted my results and comments on plone[*]:
>  
>      <http://www.scipy.org/wikis/featurerequests/SparseSolvers>
>  
>  Bottom line is that, with a couple of exceptions, 
> PySparse is both 
>  faster and less memory intensive than SciPy. I don't 
> know whether 
>  anything can be lifted from PySparse to improve SciPy's 
> implementation.
>  
>  [*] Not that this comes as a surprise to anybody here, 
> but the SciPy 
>  plone wiki is scary slow. I also couldn't get it to 
> accept reST, even 
>  though I've seen other people using it there.
>  -- 
>  Jonathan E. Guyer, PhD
>  Metallurgy Division
>  National Institute of Standards and Technology
>  <http://www.metallurgy.nist.gov/>
>  
>  _______________________________________________
>  Scipy-dev mailing list
>  Scipy-dev@[...].net
>  http://www.scipy.net/mailman/listinfo/scipy-dev

Jonathan,

I had a short look on your comments.
Actually, you can import matrices given in matrixmarket 
format.

Help on function mmread in module scipy.io.mmio:

mmread(source)
     Reads the contents of a Matrix Market file 'filename' 
into a matrix.

     Inputs:
       source    - Matrix Market filename (extensions 
.mtx, .mtz.gz)
                   or open file object.

     Outputs:

       a         - sparse or full matrix

Are you aware of a sparse eigensolver for scipy ?

Nils

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Thread:
Travis Oliphant
Robert Cimrman
Travis Oliphant
Robert Cimrman
Fernando Perez
Jonathan Guyer
Fernando Perez
Jonathan Guyer
Jonathan Guyer
Robert Cimrman
Jonathan Guyer
Ed Schofield
Jonathan Guyer
Ed Schofield
Travis Oliphant
Jonathan Guyer
Nils Wagner
Jonathan Guyer
Robert Cimrman
Robert Kern
Robert Cimrman
Travis Oliphant
Fernando Perez
Jonathan Guyer
Travis Oliphant
Nils Wagner
Jeff Whitaker
Nils Wagner

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